Sphingomonas populi sp. nov., isolated from bark of Populus × euramericana.
Identifieur interne : 000605 ( Main/Exploration ); précédent : 000604; suivant : 000606Sphingomonas populi sp. nov., isolated from bark of Populus × euramericana.
Auteurs : Yong Li [République populaire de Chine] ; Dan-Ran Bian [République populaire de Chine] ; Ju-Pu Chang [République populaire de Chine] ; Li-Min Guo [République populaire de Chine] ; Xu-Qi Yang [République populaire de Chine]Source :
- International journal of systematic and evolutionary microbiology [ 1466-5034 ] ; 2020.
Descripteurs français
- KwdFr :
- ADN bactérien (génétique), ARN ribosomique 16S (génétique), Acides gras (composition chimique), Analyse de séquence d'ADN (MeSH), Chine (MeSH), Composition en bases nucléiques (MeSH), Glycolipides (composition chimique), Phospholipides (composition chimique), Phylogenèse (MeSH), Populus (microbiologie), Sphingomonas (classification), Sphingomonas (isolement et purification), Techniques de typage bactérien (MeSH), Ubiquinones (composition chimique), Écorce (microbiologie).
- MESH :
- composition chimique : Acides gras, Glycolipides, Phospholipides, Sphingomonas, Ubiquinones.
- génétique : ADN bactérien, ARN ribosomique 16S.
- isolement et purification : Sphingomonas.
- microbiologie : Populus, Écorce.
- Analyse de séquence d'ADN, Chine, Composition en bases nucléiques, Phylogenèse, Techniques de typage bactérien.
- Wicri :
- geographic : République populaire de Chine.
English descriptors
- KwdEn :
- Bacterial Typing Techniques (MeSH), Base Composition (MeSH), China (MeSH), DNA, Bacterial (genetics), Fatty Acids (chemistry), Glycolipids (chemistry), Phospholipids (chemistry), Phylogeny (MeSH), Plant Bark (microbiology), Populus (microbiology), RNA, Ribosomal, 16S (genetics), Sequence Analysis, DNA (MeSH), Sphingomonas (classification), Sphingomonas (isolation & purification), Ubiquinone (chemistry).
- MESH :
- chemical , chemistry : Fatty Acids, Glycolipids, Phospholipids, Ubiquinone.
- chemical , genetics : DNA, Bacterial, RNA, Ribosomal, 16S.
- geographic : China.
- classification : Sphingomonas.
- isolation & purification : Sphingomonas.
- microbiology : Plant Bark, Populus.
- Bacterial Typing Techniques, Base Composition, Phylogeny, Sequence Analysis, DNA.
Abstract
One Gram-stain-negative, aerobic, motile bacterial strain, 3-7T, was isolated from symptomatic canker bark tissue of Populus × euramericana. 16S rRNA gene sequence data revealed that the novel isolate shared highest similarity with Sphingomonas panacis DCY99T (98.8 %), and <96.5 % sequence similarity with all other species with validly published names. Growth occurred between 15 and 37 °C and at pH 6.0-9.0, and optimal growth occurred at 30 °C and pH 7.0-8.0. Nitrogen was produced from nitrates. The strain was positive for acetoin production and activity of catalase, oxidase, β-galactosidase, arginine dihydrolase and β-glucosidase. The major fatty acids were C16 : 0, C18 : 1ω7c and/or C18 : 1ω6c. The polar lipids of the novel isolate included diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, phosphatidylcholine, sphingoglycolipid, glycolipid, two uncharacterized phospholipids and two uncharacterized lipids. The respiratory quinones detected in isolate 3-7T were Q-10 (96.9 %) and Q-9 (3.1 %). The DNA G+C content was 65.1 mol%. Based on phenotypic and genotypic characteristics, the isolate represents a novel species within the genus Sphingomonas, for which the name Sphingomonas populi is proposed. The type strain is 3-7T (=CFCC 11561T=LMG 30138T).
DOI: 10.1099/ijsem.0.003841
PubMed: 31778350
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>The Key Laboratory of State Forestry and Grassland Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Bian, Dan Ran" sort="Bian, Dan Ran" uniqKey="Bian D" first="Dan-Ran" last="Bian">Dan-Ran Bian</name><affiliation wicri:level="1"><nlm:affiliation>The Key Laboratory of State Forestry and Grassland Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</nlm:affiliation><country xml:lang="fr">République populaire de 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China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Puyang Academy of Forestry, Puyang 457000</wicri:regionArea><wicri:noRegion>Puyang 457000</wicri:noRegion></affiliation></author><author><name sortKey="Yang, Xu Qi" sort="Yang, Xu Qi" uniqKey="Yang X" first="Xu-Qi" last="Yang">Xu-Qi Yang</name><affiliation wicri:level="1"><nlm:affiliation>Puyang Academy of Forestry, Puyang 457000, PR China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Puyang Academy of Forestry, Puyang 457000</wicri:regionArea><wicri:noRegion>Puyang 457000</wicri:noRegion></affiliation></author></analytic><series><title level="j">International journal of systematic and evolutionary microbiology</title><idno type="eISSN">1466-5034</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Bacterial Typing Techniques (MeSH)</term><term>Base Composition (MeSH)</term><term>China (MeSH)</term><term>DNA, Bacterial (genetics)</term><term>Fatty Acids (chemistry)</term><term>Glycolipids (chemistry)</term><term>Phospholipids (chemistry)</term><term>Phylogeny (MeSH)</term><term>Plant Bark (microbiology)</term><term>Populus (microbiology)</term><term>RNA, Ribosomal, 16S (genetics)</term><term>Sequence Analysis, DNA (MeSH)</term><term>Sphingomonas (classification)</term><term>Sphingomonas (isolation & purification)</term><term>Ubiquinone (chemistry)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN bactérien (génétique)</term><term>ARN ribosomique 16S (génétique)</term><term>Acides gras (composition chimique)</term><term>Analyse de séquence d'ADN (MeSH)</term><term>Chine (MeSH)</term><term>Composition en bases nucléiques (MeSH)</term><term>Glycolipides (composition chimique)</term><term>Phospholipides (composition chimique)</term><term>Phylogenèse (MeSH)</term><term>Populus (microbiologie)</term><term>Sphingomonas (classification)</term><term>Sphingomonas (isolement et purification)</term><term>Techniques de typage bactérien (MeSH)</term><term>Ubiquinones (composition chimique)</term><term>Écorce (microbiologie)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Fatty Acids</term><term>Glycolipids</term><term>Phospholipids</term><term>Ubiquinone</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Bacterial</term><term>RNA, Ribosomal, 16S</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>China</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Sphingomonas</term></keywords><keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>Acides gras</term><term>Glycolipides</term><term>Phospholipides</term><term>Sphingomonas</term><term>Ubiquinones</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN bactérien</term><term>ARN ribosomique 16S</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Sphingomonas</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Sphingomonas</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Populus</term><term>Écorce</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Bark</term><term>Populus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Bacterial Typing Techniques</term><term>Base Composition</term><term>Phylogeny</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Chine</term><term>Composition en bases nucléiques</term><term>Phylogenèse</term><term>Techniques de typage bactérien</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>République populaire de Chine</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">One Gram-stain-negative, aerobic, motile bacterial strain, 3-7<sup>T</sup>, was isolated from symptomatic canker bark tissue of <i>Populus × euramericana</i>. 16S rRNA gene sequence data revealed that the novel isolate shared highest similarity with <i>Sphingomonas panacis</i> DCY99<sup>T</sup> (98.8 %), and <96.5 % sequence similarity with all other species with validly published names. Growth occurred between 15 and 37 °C and at pH 6.0-9.0, and optimal growth occurred at 30 °C and pH 7.0-8.0. Nitrogen was produced from nitrates. The strain was positive for acetoin production and activity of catalase, oxidase, <i>β</i>-galactosidase, arginine dihydrolase and <i>β</i>-glucosidase. The major fatty acids were C<sub>16 : 0</sub>, C<sub>18 : 1</sub>ω7<i>c</i> and/or C<sub>18 : 1</sub>ω6<i>c</i>. The polar lipids of the novel isolate included diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, phosphatidylcholine, sphingoglycolipid, glycolipid, two uncharacterized phospholipids and two uncharacterized lipids. The respiratory quinones detected in isolate 3-7<sup>T</sup> were Q-10 (96.9 %) and Q-9 (3.1 %). The DNA G+C content was 65.1 mol%. Based on phenotypic and genotypic characteristics, the isolate represents a novel species within the genus <i>Sphingomonas</i>, for which the name <i>Sphingomonas populi</i> is proposed. The type strain is 3-7<sup>T</sup> (=CFCC 11561<sup>T</sup>=LMG 30138<sup>T</sup>).</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">31778350</PMID><DateCompleted><Year>2020</Year><Month>03</Month><Day>11</Day></DateCompleted><DateRevised><Year>2020</Year><Month>03</Month><Day>11</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Electronic">1466-5034</ISSN><JournalIssue CitedMedium="Internet"><Volume>70</Volume><Issue>2</Issue><PubDate><Year>2020</Year><Month>Feb</Month></PubDate></JournalIssue><Title>International journal of systematic and evolutionary microbiology</Title><ISOAbbreviation>Int J Syst Evol Microbiol</ISOAbbreviation></Journal><ArticleTitle><i>Sphingomonas populi</i> sp. nov., isolated from bark of <i>Populus × euramericana</i>.</ArticleTitle><Pagination><MedlinePgn>897-901</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1099/ijsem.0.003841</ELocationID><Abstract><AbstractText>One Gram-stain-negative, aerobic, motile bacterial strain, 3-7<sup>T</sup>, was isolated from symptomatic canker bark tissue of <i>Populus × euramericana</i>. 16S rRNA gene sequence data revealed that the novel isolate shared highest similarity with <i>Sphingomonas panacis</i> DCY99<sup>T</sup> (98.8 %), and <96.5 % sequence similarity with all other species with validly published names. Growth occurred between 15 and 37 °C and at pH 6.0-9.0, and optimal growth occurred at 30 °C and pH 7.0-8.0. Nitrogen was produced from nitrates. The strain was positive for acetoin production and activity of catalase, oxidase, <i>β</i>-galactosidase, arginine dihydrolase and <i>β</i>-glucosidase. The major fatty acids were C<sub>16 : 0</sub>, C<sub>18 : 1</sub>ω7<i>c</i> and/or C<sub>18 : 1</sub>ω6<i>c</i>. The polar lipids of the novel isolate included diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, phosphatidylcholine, sphingoglycolipid, glycolipid, two uncharacterized phospholipids and two uncharacterized lipids. The respiratory quinones detected in isolate 3-7<sup>T</sup> were Q-10 (96.9 %) and Q-9 (3.1 %). The DNA G+C content was 65.1 mol%. Based on phenotypic and genotypic characteristics, the isolate represents a novel species within the genus <i>Sphingomonas</i>, for which the name <i>Sphingomonas populi</i> is proposed. The type strain is 3-7<sup>T</sup> (=CFCC 11561<sup>T</sup>=LMG 30138<sup>T</sup>).</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Yong</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>The Key Laboratory of State Forestry and Grassland Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bian</LastName><ForeName>Dan-Ran</ForeName><Initials>DR</Initials><AffiliationInfo><Affiliation>The Key Laboratory of State Forestry and Grassland Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chang</LastName><ForeName>Ju-Pu</ForeName><Initials>JP</Initials><AffiliationInfo><Affiliation>Puyang Academy of Forestry, Puyang 457000, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Guo</LastName><ForeName>Li-Min</ForeName><Initials>LM</Initials><AffiliationInfo><Affiliation>Puyang Academy of Forestry, Puyang 457000, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yang</LastName><ForeName>Xu-Qi</ForeName><Initials>XQ</Initials><AffiliationInfo><Affiliation>Puyang Academy of Forestry, Puyang 457000, PR China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Int J Syst Evol Microbiol</MedlineTA><NlmUniqueID>100899600</NlmUniqueID><ISSNLinking>1466-5026</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005227">Fatty Acids</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D006017">Glycolipids</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010743">Phospholipids</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance></Chemical><Chemical><RegistryNumber>1339-63-5</RegistryNumber><NameOfSubstance UI="D014451">Ubiquinone</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D015373" MajorTopicYN="N">Bacterial Typing Techniques</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D001482" MajorTopicYN="N">Base Composition</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002681" MajorTopicYN="N" Type="Geographic">China</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005227" MajorTopicYN="N">Fatty Acids</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D006017" MajorTopicYN="N">Glycolipids</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010743" MajorTopicYN="N">Phospholipids</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D024301" MajorTopicYN="N">Plant Bark</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020578" MajorTopicYN="N">Sphingomonas</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014451" MajorTopicYN="N">Ubiquinone</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Sphingomonas</Keyword><Keyword MajorTopicYN="N">endophytic bacteria</Keyword><Keyword MajorTopicYN="N">new taxon</Keyword><Keyword MajorTopicYN="N">populi</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2019</Year><Month>11</Month><Day>30</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>3</Month><Day>12</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2019</Year><Month>11</Month><Day>29</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">31778350</ArticleId><ArticleId IdType="doi">10.1099/ijsem.0.003841</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country><settlement><li>Pékin</li></settlement></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Li, Yong" sort="Li, Yong" uniqKey="Li Y" first="Yong" last="Li">Yong Li</name></noRegion><name sortKey="Bian, Dan Ran" sort="Bian, Dan Ran" uniqKey="Bian D" first="Dan-Ran" last="Bian">Dan-Ran Bian</name><name sortKey="Chang, Ju Pu" sort="Chang, Ju Pu" uniqKey="Chang J" first="Ju-Pu" last="Chang">Ju-Pu Chang</name><name sortKey="Guo, Li Min" sort="Guo, Li Min" uniqKey="Guo L" first="Li-Min" last="Guo">Li-Min Guo</name><name sortKey="Yang, Xu Qi" sort="Yang, Xu Qi" uniqKey="Yang X" first="Xu-Qi" last="Yang">Xu-Qi Yang</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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